IL_6R87_153
3D structure
- PDB id
- 6R87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUUCCGG*UUGAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R87_153 not in the Motif Atlas
- Geometric match to IL_7VYX_008
- Geometric discrepancy: 0.3556
- The information below is about IL_7VYX_008
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.1
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
6R87|1|1|G|1013
6R87|1|1|U|1014
6R87|1|1|U|1015
6R87|1|1|C|1016
6R87|1|1|C|1017
6R87|1|1|G|1018
6R87|1|1|G|1019
*
6R87|1|1|U|1033
6R87|1|1|U|1034
6R87|1|1|G|1035
6R87|1|1|A|1036
6R87|1|1|C|1037
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain B
- Transfer RNA; tRNA
- Chain H
- 60S ribosomal protein L5
- Chain M
- 60S ribosomal protein L11-B
- Chain s
- 60S ribosomal protein L10
Coloring options: