IL_6R87_162
3D structure
- PDB id
- 6R87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast Vms1 (Q295L)-60S ribosomal subunit complex (pre-state without Arb1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UCAAAGU*AACCAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6R87_162 not in the Motif Atlas
- Homologous match to IL_8CRE_093
- Geometric discrepancy: 0.1112
- The information below is about IL_8CRE_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88116.2
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6R87|1|1|U|2211
6R87|1|1|C|2212
6R87|1|1|A|2213
6R87|1|1|A|2214
6R87|1|1|A|2215
6R87|1|1|G|2216
6R87|1|1|U|2217
*
6R87|1|1|A|2228
6R87|1|1|A|2229
6R87|1|1|C|2230
6R87|1|1|C|2231
6R87|1|1|A|2232
6R87|1|1|A|2233
6R87|1|1|G|2234
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L42-A
- Chain k
- 60S ribosomal protein L36-A
Coloring options: