IL_6RBD_043

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GUUU*AUC

Length

7 nucleotides

Bulged bases

6RBD|1|2|U|820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBD_043 not in the Motif Atlas

Geometric match to IL_2O3V_001

Geometric discrepancy: 0.2012

The information below is about IL_2O3V_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

6RBD|1|2|G|819
6RBD|1|2|U|820
6RBD|1|2|U|821
6RBD|1|2|U|822
*
6RBD|1|2|A|850
6RBD|1|2|U|851
6RBD|1|2|C|852

Current chains

Chain 2

20S ribosomal RNA

Nearby chains