IL_6RBD_071

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CUA*UGGAAG

Length

9 nucleotides

Bulged bases

6RBD|1|2|U|1390

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBD_071 not in the Motif Atlas

Homologous match to IL_4V88_458

Geometric discrepancy: 0.1928

The information below is about IL_4V88_458

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_58032.1

Basepair signature

cWW-tWH-cWW-L-L-R

Number of instances in this motif group

2

Unit IDs

6RBD|1|2|C|1389
6RBD|1|2|U|1390
6RBD|1|2|A|1391
*
6RBD|1|2|U|1407
6RBD|1|2|G|1408
6RBD|1|2|G|1409
6RBD|1|2|A|1410
6RBD|1|2|A|1411
6RBD|1|2|G|1412

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16-A

Chain R

40S ribosomal protein S17-A