IL_6RBD_072
3D structure
- PDB id
- 6RBD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RBD_072 not in the Motif Atlas
- Homologous match to IL_4V88_459
- Geometric discrepancy: 0.1778
- The information below is about IL_4V88_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10447.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6RBD|1|2|G|1480
6RBD|1|2|C|1481
6RBD|1|2|C|1482
6RBD|1|2|A|1483
6RBD|1|2|G|1484
6RBD|1|2|C|1485
6RBD|1|2|G|1486
6RBD|1|2|A|1487
*
6RBD|1|2|U|1519
6RBD|1|2|U|1520
6RBD|1|2|G|1521
6RBD|1|2|U|1522
6RBD|1|2|G|1523
6RBD|1|2|A|1524
6RBD|1|2|A|1525
6RBD|1|2|A|1526
6RBD|1|2|C|1527
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S5
- Chain Q
- 40S ribosomal protein S16-A
- Chain T
- 40S ribosomal protein S19-A
- Chain U
- 40S ribosomal protein S20
- Chain Z
- 40S ribosomal protein S25-A
- Chain d
- 40S ribosomal protein S29-A
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