IL_6RBD_078

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

6RBD|1|2|A|1754

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBD_078 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2654

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6RBD|1|2|C|1644
6RBD|1|2|G|1645
6RBD|1|2|C|1646
6RBD|1|2|U|1647
*
6RBD|1|2|A|1753
6RBD|1|2|A|1754
6RBD|1|2|A|1755
6RBD|1|2|A|1756
6RBD|1|2|G|1757

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23-A

Chain k

Ribosome biogenesis protein TSR1

Chain y

Dimethyladenosine transferase