IL_6RBD_082
3D structure
- PDB id
- 6RBD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- UGAG*CAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RBD_082 not in the Motif Atlas
- Geometric match to IL_4V88_471
- Geometric discrepancy: 0.1188
- The information below is about IL_4V88_471
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
6RBD|1|2|U|1669
6RBD|1|2|G|1670
6RBD|1|2|A|1671
6RBD|1|2|G|1672
*
6RBD|1|2|C|1729
6RBD|1|2|A|1730
6RBD|1|2|A|1731
6RBD|1|2|A|1732
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S6-A
- Chain I
- 40S ribosomal protein S8-A
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