IL_6RBD_088

3D structure

PDB id

6RBD (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

GCUAAC*GCGAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBD_088 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3189

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6RBD|1|2|G|703
6RBD|1|2|C|704
6RBD|1|2|U|705
6RBD|1|2|A|706
6RBD|1|2|A|707
6RBD|1|2|C|708
*
6RBD|1|2|G|730
6RBD|1|2|C|731
6RBD|1|2|G|732
6RBD|1|2|A|733
6RBD|1|2|A|734
6RBD|1|2|C|735

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-A