IL_6RBE_046

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAUC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBE_046 not in the Motif Atlas

Homologous match to IL_4V88_435

Geometric discrepancy: 0.185

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6RBE|1|2|G|985
6RBE|1|2|G|986
6RBE|1|2|G|987
6RBE|1|2|A|988
6RBE|1|2|U|989
6RBE|1|2|C|990
*
6RBE|1|2|G|1014
6RBE|1|2|U|1015
6RBE|1|2|C|1016

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14-A