IL_6RBE_073

3D structure

PDB id

6RBE (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 2 of yeast Tsr1-TAP Rps20-Deltaloop pre-40S particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAUAG*CUUCAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RBE_073 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.2326

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

6RBE|1|2|G|1540
6RBE|1|2|G|1541
6RBE|1|2|G|1542
6RBE|1|2|A|1543
6RBE|1|2|U|1544
6RBE|1|2|A|1545
6RBE|1|2|G|1546
*
6RBE|1|2|C|1565
6RBE|1|2|U|1566
6RBE|1|2|U|1567
6RBE|1|2|C|1568
6RBE|1|2|A|1569
6RBE|1|2|A|1570
6RBE|1|2|C|1571

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S18-A

Chain T

40S ribosomal protein S19-A