IL_6RI5_075
3D structure
- PDB id
- 6RI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGUCGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 6RI5|1|A|G|2335
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RI5_075 not in the Motif Atlas
- Geometric match to IL_5TBW_077
- Geometric discrepancy: 0.1264
- The information below is about IL_5TBW_077
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_06455.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
6RI5|1|A|A|1901
6RI5|1|A|G|1902
6RI5|1|A|U|1903
6RI5|1|A|C|1904
6RI5|1|A|G|1905
6RI5|1|A|G|1906
*
6RI5|1|A|C|2333
6RI5|1|A|U|2334
6RI5|1|A|G|2335
6RI5|1|A|U|2336
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain C
- 60S ribosomal protein L3
- Chain L
- 60S ribosomal protein L23-A
- Chain o
- Large subunit GTPase 1
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