IL_6RI5_080

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

6RI5|1|A|U|2159, 6RI5|1|A|U|2175, 6RI5|1|A|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RI5_080 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.1022

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

6RI5|1|A|C|2156
6RI5|1|A|G|2157
6RI5|1|A|A|2158
6RI5|1|A|U|2159
6RI5|1|A|G|2160
6RI5|1|A|G|2161
*
6RI5|1|A|U|2173
6RI5|1|A|G|2174
6RI5|1|A|U|2175
6RI5|1|A|U|2176
6RI5|1|A|G|2177
6RI5|1|A|A|2178
6RI5|1|A|C|2179
6RI5|1|A|G|2180

Current chains

Chain A

25S RNA

Nearby chains

Chain B

60S ribosomal protein L2-A

Chain m

60S ribosomal protein L43-A