IL_6RI5_084

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RI5_084 not in the Motif Atlas

Homologous match to IL_5TBW_087

Geometric discrepancy: 0.4343

The information below is about IL_5TBW_087

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6RI5|1|A|G|2206
6RI5|1|A|A|2207
6RI5|1|A|A|2208
6RI5|1|A|U|2209
6RI5|1|A|G|2210
*
6RI5|1|A|C|2235
6RI5|1|A|G|2236
6RI5|1|A|C|2237

Current chains

Chain A

25S RNA

Nearby chains

Chain w

60S ribosomal export protein NMD3