IL_6RI5_085

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RI5_085 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.1035

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6RI5|1|A|U|2211
6RI5|1|A|C|2212
6RI5|1|A|A|2213
6RI5|1|A|A|2214
6RI5|1|A|A|2215
6RI5|1|A|G|2216
6RI5|1|A|U|2217
*
6RI5|1|A|A|2228
6RI5|1|A|A|2229
6RI5|1|A|C|2230
6RI5|1|A|C|2231
6RI5|1|A|A|2232
6RI5|1|A|A|2233
6RI5|1|A|G|2234

Current chains

Chain A

25S RNA

Nearby chains

Chain h

60S ribosomal protein L36-A

Chain w

60S ribosomal export protein NMD3