3D structure

PDB id
6RI5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GUG*UUUUU
Length
8 nucleotides
Bulged bases
6RI5|1|A|U|2860
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6RI5_107 not in the Motif Atlas
Homologous match to IL_5TBW_105
Geometric discrepancy: 0.1303
The information below is about IL_5TBW_105
Detailed Annotation
Major groove minor groove platform with extra cWW
Broad Annotation
Major groove minor groove platform with extra cWW
Motif group
IL_63959.1
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
18

Unit IDs

6RI5|1|A|G|2828
6RI5|1|A|U|2829
6RI5|1|A|G|2830
*
6RI5|1|A|U|2858
6RI5|1|A|U|2859
6RI5|1|A|U|2860
6RI5|1|A|U|2861
6RI5|1|A|U|2862

Current chains

Chain A
25S RNA

Nearby chains

Chain C
60S ribosomal protein L3
Chain q
60S ribosomal protein L10

Coloring options:


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