IL_6RI5_110
3D structure
- PDB id
- 6RI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUC*GUGAG
- Length
- 8 nucleotides
- Bulged bases
- 6RI5|1|A|G|2945, 6RI5|1|A|A|2946
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RI5_110 not in the Motif Atlas
- Geometric match to IL_5TBW_108
- Geometric discrepancy: 0.0817
- The information below is about IL_5TBW_108
- Detailed Annotation
- Isolated non-canonical cWW with bulges
- Broad Annotation
- Isolated non-canonical cWW with bulges
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6RI5|1|A|C|2879
6RI5|1|A|U|2880
6RI5|1|A|C|2881
*
6RI5|1|A|G|2943
6RI5|1|A|U|2944
6RI5|1|A|G|2945
6RI5|1|A|A|2946
6RI5|1|A|G|2947
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain C
- 60S ribosomal protein L3
- Chain L
- 60S ribosomal protein L23-A
- Chain z
- Cytoplasmic 60S subunit biogenesis factor REH1
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