IL_6RI5_127

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUUG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RI5_127 not in the Motif Atlas

Homologous match to IL_5TBW_129

Geometric discrepancy: 0.1286

The information below is about IL_5TBW_129

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6RI5|1|A|U|3300
6RI5|1|A|U|3301
6RI5|1|A|U|3302
6RI5|1|A|G|3303
*
6RI5|1|A|C|3311
6RI5|1|A|U|3312
6RI5|1|A|U|3313
6RI5|1|A|A|3314

Current chains

Chain A

25S RNA

Nearby chains

Chain C

60S ribosomal protein L3

Chain U

60S ribosomal protein L17-A

Chain d

60S ribosomal protein L31-A