IL_6RI5_154

3D structure

PDB id

6RI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGCU*GAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RI5_154 not in the Motif Atlas

Homologous match to IL_8C3A_111

Geometric discrepancy: 0.103

The information below is about IL_8C3A_111

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50458.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

6RI5|1|A|G|2823
6RI5|1|A|G|2824
6RI5|1|A|C|2825
6RI5|1|A|U|2826
*
6RI5|1|A|G|2863
6RI5|1|A|A|2864
6RI5|1|A|U|2865
6RI5|1|A|U|2866
6RI5|1|A|C|2867

Current chains

Chain A

25S RNA

Nearby chains

Chain C

60S ribosomal protein L3

Chain q

60S ribosomal protein L10