IL_6RM3_034

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUUGAAG*UAGAA

Length

13 nucleotides

Bulged bases

6RM3|1|L50|U|1074

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_034 not in the Motif Atlas

Geometric match to IL_3V7E_002

Geometric discrepancy: 0.1847

The information below is about IL_3V7E_002

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6RM3|1|L50|U|1071
6RM3|1|L50|A|1072
6RM3|1|L50|U|1073
6RM3|1|L50|U|1074
6RM3|1|L50|G|1075
6RM3|1|L50|A|1076
6RM3|1|L50|A|1077
6RM3|1|L50|G|1078
*
6RM3|1|L50|U|1097
6RM3|1|L50|A|1098
6RM3|1|L50|G|1099
6RM3|1|L50|A|1100
6RM3|1|L50|A|1101

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LC0

uL4

Chain LEE

eL32

Chain LY0

uL24