IL_6RM3_040

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_040 not in the Motif Atlas

Geometric match to IL_4WF9_064

Geometric discrepancy: 0.19

The information below is about IL_4WF9_064

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

6RM3|1|L50|G|1433
6RM3|1|L50|G|1434
6RM3|1|L50|A|1435
6RM3|1|L50|A|1436
*
6RM3|1|L50|U|1695
6RM3|1|L50|C|1696

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LB0

uL3

Chain LV0

uL14