IL_6RM3_042

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGUAAC*GGAUAAA

Length

13 nucleotides

Bulged bases

6RM3|1|L50|U|1466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_042 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1462

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6RM3|1|L50|U|1453
6RM3|1|L50|G|1454
6RM3|1|L50|U|1455
6RM3|1|L50|A|1456
6RM3|1|L50|A|1457
6RM3|1|L50|C|1458
*
6RM3|1|L50|G|1463
6RM3|1|L50|G|1464
6RM3|1|L50|A|1465
6RM3|1|L50|U|1466
6RM3|1|L50|A|1467
6RM3|1|L50|A|1468
6RM3|1|L50|A|1469

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LPP

eL43

Chain S60

Small subunit ribosomal RNA; SSU rRNA