IL_6RM3_048

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6RM3|1|L50|A|1640, 6RM3|1|L50|C|1646, 6RM3|1|L50|C|1665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_048 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1572

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6RM3|1|L50|C|1636
6RM3|1|L50|C|1637
6RM3|1|L50|A|1638
6RM3|1|L50|A|1639
6RM3|1|L50|A|1640
6RM3|1|L50|U|1641
6RM3|1|L50|G|1642
6RM3|1|L50|C|1643
6RM3|1|L50|C|1644
6RM3|1|L50|U|1645
6RM3|1|L50|C|1646
6RM3|1|L50|G|1647
*
6RM3|1|L50|C|1663
6RM3|1|L50|G|1664
6RM3|1|L50|C|1665
6RM3|1|L50|G|1666

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LNN

MDF2

Chain S60

Small subunit ribosomal RNA; SSU rRNA