IL_6RM3_064

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6RM3|1|L50|G|2214, 6RM3|1|L50|A|2215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_064 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.1781

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6RM3|1|L50|C|2148
6RM3|1|L50|U|2149
6RM3|1|L50|C|2150
*
6RM3|1|L50|G|2212
6RM3|1|L50|U|2213
6RM3|1|L50|G|2214
6RM3|1|L50|A|2215
6RM3|1|L50|G|2216

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LB0

uL3

Chain LNN

MDF2

Chain LV0

uL14