IL_6RM3_070

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUAGUAC*GGAACU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_070 not in the Motif Atlas

Geometric match to IL_4V9F_092

Geometric discrepancy: 0.1215

The information below is about IL_4V9F_092

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6RM3|1|L50|A|2283
6RM3|1|L50|U|2284
6RM3|1|L50|A|2285
6RM3|1|L50|G|2286
6RM3|1|L50|U|2287
6RM3|1|L50|A|2288
6RM3|1|L50|C|2289
*
6RM3|1|L50|G|2294
6RM3|1|L50|G|2295
6RM3|1|L50|A|2296
6RM3|1|L50|A|2297
6RM3|1|L50|C|2298
6RM3|1|L50|U|2299

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LH0

uL6