IL_6RM3_072

3D structure

PDB id

6RM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAGUG*CUUAG

Length

10 nucleotides

Bulged bases

6RM3|1|L50|G|2320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RM3_072 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.4362

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6RM3|1|L50|U|2318
6RM3|1|L50|A|2319
6RM3|1|L50|G|2320
6RM3|1|L50|U|2321
6RM3|1|L50|G|2322
*
6RM3|1|L50|C|2346
6RM3|1|L50|U|2347
6RM3|1|L50|U|2348
6RM3|1|L50|A|2349
6RM3|1|L50|G|2350

Current chains

Chain L50

23S rRNA

Nearby chains

Chain LB0

uL3

Chain LDD

eL31

Chain LW0

eL24