IL_6RXU_008
3D structure
- PDB id
- 6RXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CACC*GAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RXU_008 not in the Motif Atlas
- Geometric match to IL_3WBM_002
- Geometric discrepancy: 0.3223
- The information below is about IL_3WBM_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6RXU|1|C1|C|137
6RXU|1|C1|A|138
6RXU|1|C1|C|139
6RXU|1|C1|C|140
*
6RXU|1|C1|G|198
6RXU|1|C1|A|199
6RXU|1|C1|A|200
6RXU|1|C1|G|201
Current chains
- Chain C1
- 35S rRNA
Nearby chains
- Chain CE
- Snu13
- Chain UD
- Utp4
- Chain UK
- U3 small nucleolar RNA-associated protein 11
- Chain UR
- Utp18
Coloring options: