IL_6RXU_014

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AAG*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RXU_014 not in the Motif Atlas

Geometric match to IL_4ZC7_002

Geometric discrepancy: 0.2729

The information below is about IL_4ZC7_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

6RXU|1|C1|A|215
6RXU|1|C1|A|216
6RXU|1|C1|G|217
*
6RXU|1|C1|C|227
6RXU|1|C1|G|228
6RXU|1|C1|U|231

Current chains

Chain C1

35S rRNA

Nearby chains

Chain CI

Bms1

Chain Cj

40S ribosomal protein S16-like protein

Chain UK

U3 small nucleolar RNA-associated protein 11