IL_6RXU_020

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

6RXU|1|C1|C|322

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RXU_020 not in the Motif Atlas

Geometric match to IL_5J7L_311

Geometric discrepancy: 0.2217

The information below is about IL_5J7L_311

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6RXU|1|C1|C|317
6RXU|1|C1|C|318
*
6RXU|1|C1|G|321
6RXU|1|C1|C|322
6RXU|1|C1|G|323

Current chains

Chain C1

35S rRNA

Nearby chains

Chain UG

Utp7