IL_6RXU_024
3D structure
- PDB id
- 6RXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GUCG*CCUC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RXU_024 not in the Motif Atlas
- Geometric match to IL_6JDV_001
- Geometric discrepancy: 0.1877
- The information below is about IL_6JDV_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6RXU|1|C1|G|376
6RXU|1|C1|U|377
6RXU|1|C1|C|378
6RXU|1|C1|G|379
*
6RXU|1|C1|C|387
6RXU|1|C1|C|388
6RXU|1|C1|U|389
6RXU|1|C1|C|390
Current chains
- Chain C1
- 35S rRNA
Nearby chains
- Chain CB
- Nop1
- Chain CI
- Bms1
- Chain CT
- Fcf2
- Chain UK
- U3 small nucleolar RNA-associated protein 11
- Chain UZ
- Utp30
Coloring options: