IL_6RXU_041
3D structure
- PDB id
- 6RXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6RXU|1|C1|U|754
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RXU_041 not in the Motif Atlas
- Geometric match to IL_4V88_394
- Geometric discrepancy: 0.1275
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
6RXU|1|C1|G|727
6RXU|1|C1|G|728
6RXU|1|C1|A|729
6RXU|1|C1|U|730
6RXU|1|C1|A|731
6RXU|1|C1|A|732
6RXU|1|C1|C|733
*
6RXU|1|C1|G|749
6RXU|1|C1|C|750
6RXU|1|C1|U|751
6RXU|1|C1|A|752
6RXU|1|C1|A|753
6RXU|1|C1|U|754
6RXU|1|C1|A|755
6RXU|1|C1|C|756
Current chains
- Chain C1
- 35S rRNA
Nearby chains
- Chain CW
- Ribosome biogenesis protein ENP2
- Chain Cd
- 40S ribosomal protein S6
- Chain UT
- Utp20
Coloring options: