IL_6RXU_047

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CACG*CGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RXU_047 not in the Motif Atlas

Homologous match to IL_4V88_400

Geometric discrepancy: 0.2302

The information below is about IL_4V88_400

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47298.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

3

Unit IDs

6RXU|1|C1|C|854
6RXU|1|C1|A|855
6RXU|1|C1|C|856
6RXU|1|C1|G|857
*
6RXU|1|C1|C|867
6RXU|1|C1|G|868
6RXU|1|C1|G|869

Current chains

Chain C1

35S rRNA

Nearby chains

Chain Cd

40S ribosomal protein S6

Chain UT

Utp20