IL_6RXU_051

3D structure

PDB id

6RXU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RXU_051 not in the Motif Atlas

Homologous match to IL_4V88_406

Geometric discrepancy: 0.3027

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

6RXU|1|C1|C|995
6RXU|1|C1|A|996
6RXU|1|C1|U|997
*
6RXU|1|C1|A|1004
6RXU|1|C1|A|1005
6RXU|1|C1|G|1006

Current chains

Chain C1

35S rRNA

Nearby chains

Chain CI

Bms1

Chain CR

Kre33

Chain Cd

40S ribosomal protein S6