IL_6RXU_074
3D structure
- PDB id
- 6RXU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S pre-ribosome (Kre33-Noc4) from Chaetomium thermophilum, state B1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAA*UUUGUACACACCGCC
- Length
- 18 nucleotides
- Bulged bases
- 6RXU|1|C1|C|2222
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RXU_074 not in the Motif Atlas
- Geometric match to IL_8C3A_510
- Geometric discrepancy: 0.3683
- The information below is about IL_8C3A_510
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.3
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 49
Unit IDs
6RXU|1|C1|G|1734
6RXU|1|C1|A|1735
6RXU|1|C1|A|1736
*
6RXU|1|C1|U|2209
6RXU|1|C1|U|2210
6RXU|1|C1|U|2211
6RXU|1|C1|G|2212
6RXU|1|C1|U|2213
6RXU|1|C1|A|2214
6RXU|1|C1|C|2215
6RXU|1|C1|A|2216
6RXU|1|C1|C|2217
6RXU|1|C1|A|2218
6RXU|1|C1|C|2219
6RXU|1|C1|C|2220
6RXU|1|C1|G|2221
6RXU|1|C1|C|2222
6RXU|1|C1|C|2223
Current chains
- Chain C1
- 35S rRNA
Nearby chains
- Chain CK
- Putative U3 small nucleolar ribonucleoprotein
- Chain CL
- Putative U3 small nucleolar ribonucleoprotein protein
- Chain UA
- Periodic tryptophan protein 2-like protein
- Chain UB
- Utp2
- Chain UL
- Utp12
- Chain UM
- Utp13
Coloring options: