IL_6RZZ_071

3D structure

PDB id

6RZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGAA*UC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6RZZ_071 not in the Motif Atlas

Geometric match to IL_7RQB_066

Geometric discrepancy: 0.0763

The information below is about IL_7RQB_066

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6RZZ|1|A|G|1898
6RZZ|1|A|G|1899
6RZZ|1|A|A|1900
6RZZ|1|A|A|1901
*
6RZZ|1|A|U|2336
6RZZ|1|A|C|2337

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L3

Chain L

60S ribosomal protein L23-A

Chain o

Large subunit GTPase 1