IL_6RZZ_128
3D structure
- PDB id
- 6RZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AGAG*CGAU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RZZ_128 not in the Motif Atlas
- Geometric match to IL_4V9F_100
- Geometric discrepancy: 0.2516
- The information below is about IL_4V9F_100
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.1
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 44
Unit IDs
6RZZ|1|A|A|3342
6RZZ|1|A|G|3343
6RZZ|1|A|A|3344
6RZZ|1|A|G|3345
*
6RZZ|1|A|C|3360
6RZZ|1|A|G|3361
6RZZ|1|A|A|3362
6RZZ|1|A|U|3363
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain u
- Cytoplasmic 60S subunit biogenesis factor REI1
- Chain v
- 60S ribosomal protein L24-A
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