IL_6RZZ_135
3D structure
- PDB id
- 6RZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GACCGAGUAG*CGAAACUC
- Length
- 18 nucleotides
- Bulged bases
- 6RZZ|1|x|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6RZZ_135 not in the Motif Atlas
- Geometric match to IL_3DIL_003
- Geometric discrepancy: 0.3691
- The information below is about IL_3DIL_003
- Detailed Annotation
- 9x8 Sarcin-Ricin with GA cWW pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34470.3
- Basepair signature
- cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6RZZ|1|x|G|71
6RZZ|1|x|A|72
6RZZ|1|x|C|73
6RZZ|1|x|C|74
6RZZ|1|x|G|75
6RZZ|1|x|A|76
6RZZ|1|x|G|77
6RZZ|1|x|U|78
6RZZ|1|x|A|79
6RZZ|1|x|G|80
*
6RZZ|1|x|C|100
6RZZ|1|x|G|101
6RZZ|1|x|A|102
6RZZ|1|x|A|103
6RZZ|1|x|A|104
6RZZ|1|x|C|105
6RZZ|1|x|U|106
6RZZ|1|x|C|107
Current chains
- Chain x
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- 60S ribosomal protein L20-A
- Chain b
- 60S ribosomal protein L7-A
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