IL_6S05_010

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUC*GAC

Length

7 nucleotides

Bulged bases

6S05|1|A|U|190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S05_010 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.2471

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

6S05|1|A|G|189
6S05|1|A|U|190
6S05|1|A|U|191
6S05|1|A|C|192
*
6S05|1|A|G|203
6S05|1|A|A|204
6S05|1|A|C|205

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L4-A

Chain X

60S ribosomal protein L26-A

Chain e

60S ribosomal protein L32