IL_6S05_027

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S05_027 not in the Motif Atlas

Homologous match to IL_8C3A_029

Geometric discrepancy: 0.1542

The information below is about IL_8C3A_029

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6S05|1|A|C|803
6S05|1|A|C|804
6S05|1|A|G|805
*
6S05|1|A|C|938
6S05|1|A|U|939
6S05|1|A|G|940

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L4-A

Chain N

60S ribosomal protein L28