IL_6S05_048

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCAUCUAGACAG*CCGAAUGA

Length

20 nucleotides

Bulged bases

6S05|1|A|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S05|1|A|U|1215
6S05|1|A|C|1216
6S05|1|A|A|1217
6S05|1|A|U|1218
6S05|1|A|C|1219
6S05|1|A|U|1220
6S05|1|A|A|1221
6S05|1|A|G|1222
6S05|1|A|A|1223
6S05|1|A|C|1224
6S05|1|A|A|1225
6S05|1|A|G|1226
*
6S05|1|A|C|1283
6S05|1|A|C|1284
6S05|1|A|G|1285
6S05|1|A|A|1286
6S05|1|A|A|1287
6S05|1|A|U|1288
6S05|1|A|G|1289
6S05|1|A|A|1290

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain S

60S ribosomal protein L20-A

Chain T

60S ribosomal protein L21-A