IL_6S05_052
3D structure
- PDB id
- 6S05 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGACGAAGCC*GGUCGAA
- Length
- 17 nucleotides
- Bulged bases
- 6S05|1|A|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S05_052 not in the Motif Atlas
- Geometric match to IL_4V88_508
- Geometric discrepancy: 0.393
- The information below is about IL_4V88_508
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99095.1
- Basepair signature
- cWW-tSS-L-tSH-L-R-R-R-L-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6S05|1|A|U|1388
6S05|1|A|G|1389
6S05|1|A|A|1390
6S05|1|A|C|1391
6S05|1|A|G|1392
6S05|1|A|A|1393
6S05|1|A|A|1394
6S05|1|A|G|1395
6S05|1|A|C|1396
6S05|1|A|C|1397
*
6S05|1|A|G|1413
6S05|1|A|G|1414
6S05|1|A|U|1415
6S05|1|A|C|1416
6S05|1|A|G|1417
6S05|1|A|A|1418
6S05|1|A|A|1419
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L4-A
- Chain G
- 60S ribosomal protein L6-A
- Chain U
- 60S ribosomal protein L17-A
- Chain X
- 60S ribosomal protein L26-A
- Chain e
- 60S ribosomal protein L32
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: