IL_6S05_058

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

6S05|1|A|U|1820, 6S05|1|A|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S05_058 not in the Motif Atlas

Geometric match to IL_4WF9_071

Geometric discrepancy: 0.3301

The information below is about IL_4WF9_071

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_78536.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6S05|1|A|G|1623
6S05|1|A|G|1624
*
6S05|1|A|U|1819
6S05|1|A|U|1820
6S05|1|A|U|1821
6S05|1|A|C|1822

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain g

60S ribosomal protein L34-A

Chain j

60S ribosomal protein L38