IL_6S05_089
3D structure
- PDB id
- 6S05 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AGACGUUCUAGCAUUCAAG*UGAU
- Length
- 23 nucleotides
- Bulged bases
- 6S05|1|A|G|2549, 6S05|1|A|U|2551, 6S05|1|A|C|2552, 6S05|1|A|U|2553, 6S05|1|A|A|2554, 6S05|1|A|U|2558, 6S05|1|A|U|2559, 6S05|1|A|C|2560
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6S05|1|A|A|2529
6S05|1|A|G|2530
6S05|1|A|A|2547
6S05|1|A|C|2548
6S05|1|A|G|2549
6S05|1|A|U|2550
6S05|1|A|U|2551
6S05|1|A|C|2552
6S05|1|A|U|2553
6S05|1|A|A|2554
6S05|1|A|G|2555
6S05|1|A|C|2556
6S05|1|A|A|2557
6S05|1|A|U|2558
6S05|1|A|U|2559
6S05|1|A|C|2560
6S05|1|A|A|2561
6S05|1|A|A|2562
6S05|1|A|G|2563
*
6S05|1|A|U|2578
6S05|1|A|G|2579
6S05|1|A|A|2580
6S05|1|A|U|2581
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L2-A
- Chain H
- 60S ribosomal protein L8-A
- Chain W
- 60S ribosomal protein L25
- Chain Y
- 60S ribosomal protein L27-A
- Chain c
- 60S ribosomal protein L30
- Chain g
- 60S ribosomal protein L34-A
- Chain m
- 60S ribosomal protein L43-A
Coloring options: