IL_6S05_095

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGCUUGUGG*CUUUUUGAUUC

Length

20 nucleotides

Bulged bases

6S05|1|A|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S05|1|A|G|2823
6S05|1|A|G|2824
6S05|1|A|C|2825
6S05|1|A|U|2826
6S05|1|A|U|2827
6S05|1|A|G|2828
6S05|1|A|U|2829
6S05|1|A|G|2830
6S05|1|A|G|2831
*
6S05|1|A|C|2857
6S05|1|A|U|2858
6S05|1|A|U|2859
6S05|1|A|U|2860
6S05|1|A|U|2861
6S05|1|A|U|2862
6S05|1|A|G|2863
6S05|1|A|A|2864
6S05|1|A|U|2865
6S05|1|A|U|2866
6S05|1|A|C|2867

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L3

Chain w

60S ribosomal export protein NMD3