IL_6S05_118

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUA*UUAAGCC

Length

11 nucleotides

Bulged bases

6S05|1|A|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S05_118 not in the Motif Atlas

Geometric match to IL_4LFB_008

Geometric discrepancy: 0.384

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6S05|1|A|G|3327
6S05|1|A|G|3328
6S05|1|A|U|3329
6S05|1|A|A|3330
*
6S05|1|A|U|3373
6S05|1|A|U|3374
6S05|1|A|A|3375
6S05|1|A|A|3376
6S05|1|A|G|3377
6S05|1|A|C|3378
6S05|1|A|C|3379

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L3

Chain d

60S ribosomal protein L31-A

Chain v

60S ribosomal protein L24-A