Loop IL_6S05

3D structure

PDB id: 6S05 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

Loop

Sequence: AAGCGAAUGAUUAGAGGUUCCG*UGACCUAUUCUCAAACUUU
Length: 41 nucleotides
Bulged bases: 6S05|1|A|A|1006, 6S05|1|A|U|1007, 6S05|1|A|C|1016, 6S05|1|A|C|1038
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

6S05|1|A|A|997
6S05|1|A|A|998
6S05|1|A|G|999
6S05|1|A|C|1000
6S05|1|A|G|1001
6S05|1|A|A|1002
6S05|1|A|A|1003
6S05|1|A|U|1004
6S05|1|A|G|1005
6S05|1|A|A|1006
6S05|1|A|U|1007
6S05|1|A|U|1008
6S05|1|A|A|1009
6S05|1|A|G|1010
6S05|1|A|A|1011
6S05|1|A|G|1012
6S05|1|A|G|1013
6S05|1|A|U|1014
6S05|1|A|U|1015
6S05|1|A|C|1016
6S05|1|A|C|1017
6S05|1|A|G|1018
*
6S05|1|A|U|1034
6S05|1|A|G|1035
6S05|1|A|A|1036
6S05|1|A|C|1037
6S05|1|A|C|1038
6S05|1|A|U|1039
6S05|1|A|A|1040
6S05|1|A|U|1041
6S05|1|A|U|1042
6S05|1|A|C|1043
6S05|1|A|U|1044
6S05|1|A|C|1045
6S05|1|A|A|1046
6S05|1|A|A|1047
6S05|1|A|A|1048
6S05|1|A|C|1049
6S05|1|A|U|1050
6S05|1|A|U|1051
6S05|1|A|U|1052

Current chains

Chain A: 25S ribosomal RNA

Nearby chains

Chain E: 60S ribosomal protein L11-A
Chain P: 60S ribosomal protein L5
Chain T: 60S ribosomal protein L21-A
Chain w: 60S ribosomal export protein NMD3
Chain x: 5S ribosomal RNA; 5S rRNA

IL_6S05_136