IL_6S05_137
3D structure
- PDB id
- 6S05 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUAC*GUU
- Length
- 7 nucleotides
- Bulged bases
- 6S05|1|A|U|1181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6S05_137 not in the Motif Atlas
- Geometric match to IL_4M4O_002
- Geometric discrepancy: 0.1933
- The information below is about IL_4M4O_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
6S05|1|A|A|1180
6S05|1|A|U|1181
6S05|1|A|A|1182
6S05|1|A|C|1183
*
6S05|1|A|G|1323
6S05|1|A|U|1324
6S05|1|A|U|1325
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain J
- 60S ribosomal protein L16-B
- Chain M
- 60S ribosomal protein L14-A
- Chain S
- 60S ribosomal protein L20-A
- Chain b
- 60S ribosomal protein L7-A
- Chain f
- 60S ribosomal protein L33-A
Coloring options: