IL_6S05_151

3D structure

PDB id

6S05 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGGGUGUAGAAUAAGUGGGAG*CGCCAGUGAAAUACCACUACCUU

Length

45 nucleotides

Bulged bases

6S05|1|A|G|2451, 6S05|1|A|G|2452, 6S05|1|A|U|2453, 6S05|1|A|U|2460, 6S05|1|A|G|2466, 6S05|1|A|C|2496

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6S05|1|A|G|2448
6S05|1|A|A|2449
6S05|1|A|G|2450
6S05|1|A|G|2451
6S05|1|A|G|2452
6S05|1|A|U|2453
6S05|1|A|G|2454
6S05|1|A|U|2455
6S05|1|A|A|2456
6S05|1|A|G|2457
6S05|1|A|A|2458
6S05|1|A|A|2459
6S05|1|A|U|2460
6S05|1|A|A|2461
6S05|1|A|A|2462
6S05|1|A|G|2463
6S05|1|A|U|2464
6S05|1|A|G|2465
6S05|1|A|G|2466
6S05|1|A|G|2467
6S05|1|A|A|2468
6S05|1|A|G|2469
*
6S05|1|A|C|2476
6S05|1|A|G|2477
6S05|1|A|C|2478
6S05|1|A|C|2479
6S05|1|A|A|2480
6S05|1|A|G|2481
6S05|1|A|U|2482
6S05|1|A|G|2483
6S05|1|A|A|2484
6S05|1|A|A|2485
6S05|1|A|A|2486
6S05|1|A|U|2487
6S05|1|A|A|2488
6S05|1|A|C|2489
6S05|1|A|C|2490
6S05|1|A|A|2491
6S05|1|A|C|2492
6S05|1|A|U|2493
6S05|1|A|A|2494
6S05|1|A|C|2495
6S05|1|A|C|2496
6S05|1|A|U|2497
6S05|1|A|U|2498

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain p

uL1

Chain w

60S ribosomal export protein NMD3