IL_6S0K_007

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0K_007 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0856

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6S0K|1|A|C|239
6S0K|1|A|C|240
6S0K|1|A|A|241
6S0K|1|A|G|242
6S0K|1|A|U|243
6S0K|1|A|A|244
6S0K|1|A|G|245
*
6S0K|1|A|C|253
6S0K|1|A|G|254
6S0K|1|A|A|255
6S0K|1|A|A|256
6S0K|1|A|C|257
6S0K|1|A|G|258

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L15

Chain e

50S ribosomal protein L35