IL_6S0K_040

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

6S0K|1|A|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0K_040 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.1999

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

6S0K|1|A|G|1059
6S0K|1|A|U|1060
6S0K|1|A|U|1061
6S0K|1|A|G|1062
*
6S0K|1|A|C|1076
6S0K|1|A|A|1077
6S0K|1|A|U|1078
6S0K|1|A|C|1079

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L10

Chain J

50S ribosomal protein L11