IL_6S0K_058

3D structure

PDB id

6S0K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosome nascent chain in complex with SecA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6S0K_058 not in the Motif Atlas

Geometric match to IL_5WT1_001

Geometric discrepancy: 0.3216

The information below is about IL_5WT1_001

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

6S0K|1|A|C|1489
6S0K|1|A|A|1490
6S0K|1|A|G|1491
*
6S0K|1|A|C|1499
6S0K|1|A|G|1500

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2